This is what my batch file looks like
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"C:\Adobe\Adobe After Effects 7.0\Support Files\AfterFX.exe" -r C:\Projects\ImagesLLC\Hello.jsx"
Moderator: Paul Tuersley
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"C:\Adobe\Adobe After Effects 7.0\Support Files\AfterFX.exe" -r C:\Projects\ImagesLLC\Hello.jsx"
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"C:\Program Files\Adobe\Adobe After Effects 7.0\Support Files\AfterFX.exe" -s "var myScriptFile = new File("C:/Hello.jsx"); myScriptFile.open(); eval(myScriptFile.read()); myScriptFile.close(); app.exitAfterLaunchAndEval = false;"
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afterfx -r c:\temp\test.jsx